Add sequences from one of the output files from HMMER server to a Data Frame obtained by searching in HMMER.

Add sequences from one of the output files from HMMER server to a Data Frame obtained by searching in HMMER.

add_sequences_to_hmmer_tbl(data, extension = "fullfasta", max_times = 3)

Arguments

data

A Data Frame obtained with HMMERutils.

extension

A one-element character vector with either "fullfasta" or "fasta".

max_times

An integer with the maximum number of trials before throwing an error.

Value

A DataFrame with a new column named "hits.fullfasta" or "hits.fasta" with the sequences.